CONTOUR produces a contour map of an image or set of images either on the graphics terminal screen or on a hardcopy device. Contour levels are user specified or suitable defaults are applied. Options for coordinate transformations between the image pixels and real-world coordinates are possible via a simple linear transformation matrix defined by the user. It is possible to overlap several images onto a single contour plot by specifying multiple image buffers on the command line, or to plot them into individual windows on the plot using special windowing keywords.
Setting Contour Levels:
Contour levels for the plot may specified in one of two ways. In the first, the levels are explicitly set by the LEVELS keyword. Up to 40 levels may be specified in this way. In the second method, the keyword LOW is used to set the lowest level of the plot, and the DIFF or RATIO keywords are used to set the other levels. DIFF means that successive contours will be separated by the given difference; RATIO means that successive contours will be separated by the given ratio.
When multiple images are specified on the command line, use of these keywords sets the contour levels for ALL of the images. A technique for plotting multiple contours on the screen or in hardcopy plots with different contouring levels is described under Advanced Techniques below.
The FID keyword establishes a "fiducial" contour level for the plot. All contours above this fiducial level are plotted as normal, unbroken lines and all contours below this level are plotted as broken lines. The fiducial contour itself is plotted with a heavy solid line to distinguish it. The default value is FID=0.0, so that all negative contours will be dashed by default following the convention established by radio astronomers.
If the contour levels are not specified, the program computes its own in the following way. If multiple images are given, the the program computes levels for each image independently.
The lowest contour is the mean of the image in the area being plotted. Subsequent contours are spaced 0.5 magnitudes (a factor of 1.583) apart, or 5 contour levels per decade of intensity. This turns out to be a useful default for a wide variety of astronomical applications. The mean is computed using every fifth pixel to save time; for small images with great variations in intensity across the image, the fifth-pixel mean will not be a good representation of the true mean, and so the default contours may not produce a good plot. Use the MN command to find the true mean and set the contours by hand.
Contour Map Scaling:
By default, CONTOUR will assume nothing about the image pixel scale, and plot the axes of the contour map in pixel space, labeling the axes in rows and columns with orientation matching the appearance on the color image display.
The simplest scaling option is to specify the image pixel scale. The SCALE keyword sets the scale of both axes in arcsec/pixel, and sets the origin to be the center of the portion of the image being mapped, or to the center defined by the CEN keyword. If SCALE is omitted, the axes are displayed in pixel units. The orientation of the axes is this: the units increase from right to left on the bottom of the graph, and from bottom to top along the left side. This will be in the usual astronomical convention if north is at the top of the graph and east is at the left. Use FLIP and/or ROTATE to get the image in this orientation.
A more sophisticated scaling option is available via the USER keyword. The
USER keyword sets the scaling and labelling of each axis independently
using the contents of the FITS header. The axes are scaled according to:
X and Y axis labels are taken from the CTYPE1 and CTYPE2 cards respectively. Any of these FITS cards may be changed (or defined) using the FITS or HEDIT commands.
The most general coordinate tranformation between the image's pixel grid
(Cols,Rows) and "world coordinates" (X,Y) may be performed using the "TR="
option. This allows the user to specify a general transformation matrix
which includes possible rotation and shear terms. The "TR=" keyword
requires 6 transformation matrix elements, given in the form:
are the transformation equations. X and Y are the "world" coordinates in which you want the plot to appear, and C and R are the image Column and Row numbers.
The default scaling is equivalent to: "TR=(0.,1.,0.,0.,0.,1.)"
The SCALE=s keyword is equivalent to: "TR=(C0,s,0.0,R0,0.0,-s)" where (C0,R0) is the image central pixel.
The USER keyword is equivalent to: "TR=(CRVAL1-CDELT1*CRPIX1,CDELT1,0.0,CRVAL2-CDELT2*CRPIX2,0.0,CDELT2)" where the CXXXn are the relevant FITS cards (see USER above).
Be advised that this is an option for experts.
Contour Formatting Options:
Below are a number of options for changing the appearance of the contour lines themselves, but not affecting the actual contour levels.
EXACT tells the program to use a slower contour "following" algorithm rather than the default "fast" raster drawing algorithm. This will result in somewhat rougher (though perhaps truer) contours, and it handles dashed lines far better. In noisy cases, use of EXACT is not advised.
DASH draws contours for all images given as dashed lines (see LTYPE= below)
LWEIGHT=w: Changes the weight (line width) of the contours to W. For Screen plots, W is taken to be a multiple of the default pen width. For PostScript hardcopy plots, W is the width of the graphics pen in units of printers points. Default is 1.0 for screen plots, and 0.5 for hardcopy plots.
LTYPE=l1,l2,...: Changes the line style (solid, dashed, etc) of the contours for a given image. Multiple arguments are used to set different styles for each of the images on the command line (l1 for the first image, l2 for the second, etc). There are 7 line styles available:
|4||Dot / Short Dash|
|5||Dot / Long Dash|
|6||Short Dash / Long Dash|
COLOR=c1,c1,...: Changes the line color of the contours for a given image, by analogy with the LTYPE keyword above. The default color is white (1). At present only the 7 "primary" graphics colors are available:
Contour Plot Axis Formatting Options:
The following keywords allow you to change the format of the axes surrounding the contour map.
TITLE puts the object title (from the image header) over the contour map. This can be changed using either CH or HEDIT to suit your needs.
NOLABEL draws the axes with tick marks, but does not label the axes.
NOAXES draws the axes, but does not draw ticks or labels (e.g., plain box)
NOERASE prevents erasure of the screen before beginning a plot. This may be used to superimpose two contour plots for comparison. NOERASE is ignored for hardcopy, but there are comparable tricks for overplotting different contours with different levels discussed under Advanced Techniques below.
Large Size and Multi-Window Contour Plots:
The following command can be used to change the position and size of the contour plots on the graphics area. By default, a single contour axis window is drawn, with scaling set so as to draw the largest window on the screen (or paper) as possible and still preserve a 1:1 aspect ratio between the X and Y axes (e.g., it assumes square image pixels).
FULL draws a single plot, but without preserving a 1:1 aspect ratio. This keyword is useful for plotting contours of long-slit spectra, for example.
NH=h, NV=v: These two keywords allow the user to divide the plotting area in to HxV windows, each of which can take a separate contour plot. The window convention is the same as used in the LickMongo package. For example: "NH=2 NV=2" will divide the screen/paper in to 4 windows, 2x2 on the page.
NW=n (Single Image Contour Plotting Only): This keyword tells the contour program to put the current image into window number N, where windows are number in LickMongo fashion running left-to-right, and bottom-to-top starting in the lower left-hand corner of the graphics screen/page. This keyword is only acknowledged if ONE image was given on the command line. To build up a multi-window plot with NW=, use the NOERASE or NOPRINT keywords (for screen & hardcopy respectively - see Advanced Techniqes below)
SUBMAR=sx,sy: By default, the windows specified with NH= and NV= have margins of white space between them to accommodate axis labels, numbers, titles, etc. The amount of margin allowed is fixed automatically by the LickMongo plotting package, but the user can choose the margins with the SUBMAR command. This works the same as the LickMongo "SUBMARGINS" command/subroutine. SX and SY are scaling factors of the default margin, thus SUBMAR=1,1 is the default state.
SUBMAR=0,0 will make the windows but together, with no margin between the axes. Thus one can make a continuous grid of windows using this keyword. For example, a 2x3 grid of 9 windows with no independent axes would be drawn using: "NH=2 NV=3 SUMBAR=0,0 NOLABEL" Where the NOLABEL keyword suppresses all axis labels, but draws tick marks. Ticks could be suppressed by invoking "NOAXES" in place of "NOLABEL"
When multiple images have been specified on the command line, using the NH= and NV= keywords (without NW=) will have the following effects:
Contour Map Hardcopy:
The LickMongo plotting routines support a wide number of hardcopy devices. The default hardcopy device for your VISTA installation is indicated at startup, and may be changed (as appropriate) using the TERM command. At most installations, this will be a PostScript laser printer (like the Apple LaserWriter).
HARD instructs the program to draw the contour map on a hardcopy device instead of on the graphics screen. No plot appears on the terminal. If used by itself without either the NOPRINT or FILE= keywords, the hardcopy plot will be directed to the default printer upon completion of the plot and no "plotting file" will be retained on disk.
The following keywords ONLY work when used in conjunction with the HARD keyword:
LAND creates a hardcopy plot oriented in "Landscape" mode (X-axis along the long-axis of the paper). By default, contour plot hardcopy are given the "Portrait" orientation.
FILE=psfile: By default, HARD alone creates a scratch plotting file in a scratch disk area, and then deletes this file as soon as it is printed. Since PostScript files might be useful for embedding contour map figures in LaTeX or other wordprocessing program, or to send a contour map to others via email, this keyword creates a PostScript file named "psfile" in the user's current working directory. When the plot is completed, if the NOPRINT keyword is not given, the PostScript file will be closed and ready for printing. If NOPRINT is given, the PostScript file is not closed.
NOPRINT suppresses closing and printing of the hardcopy file. This allows the user to append successive plots the hardcopy file to facilitate building up a composite contour map (for example: multiple contour plots, with a different contour level set in each window). NOPRINT is the hardcopy equivalent of the NOERASE keyword.
There are two main motivations behind the redesign of CONTOUR. The first is to allow users to overlay 2 or more contour maps on each other in both screen and hardcopy mode. The second is to allow the user to make a multi-window plot in which each image is in a separate window. Limitations on the VISTA command-line make it difficult to give each image in the keyword list a different set of contour levels. Thus, when multiple images are plotted (either in overlay or multi-window modes), all images are given the same contour levels. To plot images with different contour levels requires that CONTOUR be executed multiple times.
For screen plots, this is straightforward. The first contour is plotted using the CONTOUR program with only one image specified. This erases the screen and draws the axes and contours. Then for each subsequent image, CONTOUR is called with the NOERASE keyword so the previous contour map is not erased from the screen. If a multi-window plot is being generated, the NW= keyword is used to make the next window on the screen.
For hardcopy, things are a bit trickier, requiring different actions for the first, middle, and last plots. The first plot is made using the keywords HARD NOPRINT FILE=psfile, which opens and initializes the PostScript file name "psfile" in the current working directory. Subsequent plots, EXCEPT THE LAST PLOT, are also made using the same HARD NOPRINT FILE=psfile keywords. For the LAST plot, only "HARD FILE=psfile" is issued, so that when the last plot is finished, the PostScript file "psfile" is closed and now ready to be printed at the user's leisure by hand.
An example is a 2x3 (HxV) 6-panel contour plot, in which each of the 6 images uses a different contour scaling. We want to make a PostScript file named "montage.ps" to contain the figure, so we can print it again later without having to regenerate it with CONTOUR each time (e.g., for a figure for a journal article). The images are in buffers 1-6. We want no axis labels or ticks, and for there be to be no white space between the plots. We also want the images to be oriented on the page so that the 3 vertical rows of 2 windows will be along the long-axis of the paper ("Portrait mode"). It would go like this:
CONTOUR 1 NH=2 NV=3 SUBMAR=0,0 HARD NOAXES FILE=montage.ps | LOW=10 DIFF=20 NW=1 NOPRINT CONTOUR 2 NH=2 NV=3 SUBMAR=0,0 HARD NOAXES FILE=montage.ps | LOW=3.5 DIFF=10 NW=2 NOPRINT CONTOUR 3 NH=2 NV=3 SUBMAR=0,0 HARD NOAXES FILE=montage.ps | LOW=1. RATIO=1.5 NW=3 NOPRINT CONTOUR 4 NH=2 NV=3 SUBMAR=0,0 HARD NOAXES FILE=montage.ps | LEVELS=(.01,.02,.03,.05,.07,.1,.2,.3,.5,.7,.9) NW=4 NOPRINT CONTOUR 5 NH=2 NV=3 SUBMAR=0,0 HARD NOAXES FILE=montage.ps | LOW=22 RATIO=1.583 NW=5 NOPRINT CONTOUR 6 NH=2 NV=3 SUBMAR=0,0 HARD NOAXES FILE=montage.ps | LEVELS=(10,20,100,1000,10000) NW=6Notice that the last invocation of CONTOUR dropped the NOPRINT keyword. Also notice that the sequence of CONTOUR calls was uninterrupted. This avoids the possibility that another graphics call will intervene, causing VISTA to forget that the file "montage.ps" is already opened and initialized.
This same sequence of commands, without the "HARD FILE=montage.ps" keyword and using NOERASE for "CONTOUR 2 ..." through "CONTOUR 6 ..." will allow you to "preview" this hardcopy plot on the screen before making the file.